PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G10000.2
Common NameEDA31
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 471aa    MW: 54298.3 Da    PI: 8.11
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G10000.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.45.8e-2188164187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l L+e+r++++++++++++k+plW+evs         rs k+C+ek+enl k+ykk+keg+++r  ++ +++++f+qlea
  AT3G10000.2  88 RWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVS---------RSGKKCREKFENLYKYYKKTKEGKSGR-RQDGKNYRFFRQLEA 164
                  8********************************98.........89***********************98.77888********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.31E-1488143No hitNo description
PfamPF138375.6E-1088165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010197Biological Processpolar nucleus fusion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEDHQNHPQY GIEQPSSQFS SDLFGFNLVS APDQHHRLHF TDHEISLLPR GIQGLTVAGN  60
NSNTITTIQS GGCVGGFSGF TDGGGTGRWP RQETLMLLEV RSRLDHKFKE ANQKGPLWDE  120
VSRSGKKCRE KFENLYKYYK KTKEGKSGRR QDGKNYRFFR QLEAIYGESK DSVSCYNNTQ  180
FIMTNALHSN FRASNIHNIV PHHQNPLMTN TNTQSQSLSI SNNFNSSSDL DLTSSSEGNE  240
TTKREGMHWK EKIKEFIGVH MERLIEKQDF WLEKLMKIVE DKEHQRMLRE EEWRRIEAER  300
IDKERSFWTK ERERIEARDV AVINALQYLT GRALIRPDSS SPTERINGNG SDKMMADNEF  360
ADEGNKGKMD KKQMNKKRKE KWSSHGGNHP RTKENMMIYN NQETKINDFC RDDDQCHHEG  420
YSPSNSKNAG TPSCSNAMAA STKCFPLLEG EGDQNLWEGY GLKQRKENNH Q
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT3G10000
AtGenExpressAT3G10000
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G10000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G10000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304870.0AJ630487.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000.
GenBankATAC0109270.0AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189853.10.0embryo sac development arrest protein 31
SwissprotQ9LZS01e-135PTL_ARATH; Trihelix transcription factor PTL
TrEMBLF4J2I30.0F4J2I3_ARATH; Embryo sac development arrest protein 31
STRINGAT3G10000.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Gong W, et al.
    Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.
    Plant Physiol., 2004. 135(2): p. 773-82
    [PMID:15208423]
  3. Brewer PB, et al.
    PETAL LOSS, a trihelix transcription factor gene, regulates perianth architecture in the Arabidopsis flower.
    Development, 2004. 131(16): p. 4035-45
    [PMID:15269176]
  4. Pagnussat GC, et al.
    Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis.
    Development, 2005. 132(3): p. 603-14
    [PMID:15634699]
  5. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]